Using the Trainer feature

Chainer has a feature called Trainer that can often be used to simplify the process of training and evaluating a model. This feature supports training a model in a way such that the user is not required to explicitly write the code for the training loop. For many types of models, including our MNIST model, Trainer allows us to write our training and evaluation code much more concisely.

Chainer contains several extensions that can be used with Trainer to visualize your results, evaluate your model, store and manage log files more easily.

This example will show how to use the Trainer feature to train a fully-connected feed-forward neural network on the MNIST dataset.

In [1]:
# Install Chainer and CuPy!

!curl https://colab.chainer.org/install | sh -
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libcusparse8.0 is already the newest version (8.0.61-1).
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1. Prepare the dataset

Load the MNIST dataset, as in the previous notebook.

In [2]:
from chainer.datasets import mnist

train, test = mnist.get_mnist()
/usr/local/lib/python3.6/dist-packages/cupy/core/fusion.py:659: FutureWarning: cupy.core.fusion is experimental. The interface can change in the future.
  util.experimental('cupy.core.fusion')
Downloading from http://yann.lecun.com/exdb/mnist/train-images-idx3-ubyte.gz...
Downloading from http://yann.lecun.com/exdb/mnist/train-labels-idx1-ubyte.gz...
Downloading from http://yann.lecun.com/exdb/mnist/t10k-images-idx3-ubyte.gz...
Downloading from http://yann.lecun.com/exdb/mnist/t10k-labels-idx1-ubyte.gz...

2. Prepare the dataset iterators

In [ ]:
from chainer import iterators

batchsize = 128

train_iter = iterators.SerialIterator(train, batchsize)
test_iter = iterators.SerialIterator(test, batchsize, False, False)

3. Prepare the Model

We use the same model as before.

In [ ]:
import chainer
import chainer.links as L
import chainer.functions as F

class MLP(chainer.Chain):

    def __init__(self, n_mid_units=100, n_out=10):
        super(MLP, self).__init__()
        with self.init_scope():
            self.l1=L.Linear(None, n_mid_units)
            self.l2=L.Linear(None, n_mid_units)
            self.l3=L.Linear(None, n_out)

    def __call__(self, x):
        h1 = F.relu(self.l1(x))
        h2 = F.relu(self.l2(h1))
        return self.l3(h2)

gpu_id = 0  # Set to -1 if you don't have a GPU

model = MLP()
if gpu_id >= 0:
    model.to_gpu(gpu_id)

4. Prepare the Updater

As mentioned above, the trainer object (instance of Trainer) actually implements the training loop for us. However, before we can use it, we must first prepare another object that will actually perform one iteration of training operations and pass it to the trainer. This other object will be an subclass of Updater such as StandardUpdater or a custom subclass. It will therefore need to hold all of the components that are needed in order to perform one iteration of training, such as a dataset iterator, and optimizer that also holds the model.

  • Updater
    • Iterator
      • Dataset
    • Optimizer
      • Model

Since we can also write customized updaters, they can perform any kinds of computations. However, for this example we will use the StandardUpdater which performs the following steps each time it is called:

  1. Retrieve a batch of data from a dataset using the iterator that we supplied.
  2. Feed the batch into the model and calculate the loss using the optimizer that we supplied. Since we will supply the model to the optimizer first, this means that the updater can also access the model from the optimizer.
  3. Update the model parameters using the optimizer that we supplied.

Once the updater has been set up, we can pass it to the trainer and start the training process. The trainer will then automatically create the training loop and call the updater once per iteration.

Now let’s create the updater object.

In [ ]:
from chainer import optimizers
from chainer import training

max_epoch = 10

# Note: L.Classifier is actually a chain that wraps 'model' to add a loss
# function.
# Since we do not specify a loss funciton here, the default
# 'softmax_cross_entropy' is used.
# The output of this modified 'model' will now be a loss value instead
# of a class label prediction.
model = L.Classifier(model)

# Send the model to the GPU.
if gpu_id >= 0:
    model.to_gpu(gpu_id)

# selection of your optimizing method
optimizer = optimizers.SGD()
# Give the optimizer a reference to the model
optimizer.setup(model)

# Get an Updater that uses the Iterator and Optimizer
updater = training.StandardUpdater(train_iter, optimizer, device=gpu_id)

NOTE

The L.Classifier object is actually a chain that places our model in its predictor attribute. This modifies model so that when it is called, it will now take both the input image batch and a class label batch as inputs to its __call__ method and output a Variable that contains the loss value. The loss function to use can be optionally set but we use the default which is softmax_cross_entropy.

Specifically, when __call__ is called on our model (which is now a L.Classifier object), the image batch is supplied to its predictor attribute, which contains our MLP model. The ourput of the MLP (which consists of class label predictions) is supplied to the loss function along with the target class labels to compute the loss value which is then returned as a Variable object.

Note that we use StandardUpdater, which is the simplest type of Updater in Chainer. There are also other types of updaters available, such as ParallelUpdater (which is intended for multiple GPUs) and you can also write a custom updater if you wish.

5. Setup Trainer

Now that we have set up an updater, we can pass it to a Trainer object. You can optionally pass a stop_trigger to the second trainer argument as a tuple, (length, unit) to tell the trainer stop automatically according to your indicated timing. The length is given as an arbitrary integer and unit is given as a string which currently must be either epoch or iteration. Without setting stop_trigger, the training will not stop automatically.

In [ ]:
# Send Updater to Trainer
trainer = training.Trainer(updater, (max_epoch, 'epoch'),
                           out='mnist_result')

The out argument in the trainer will set up an output directory to save the logfiles, the image files of graphs to show the time progress of loss, accuracy, etc.

Next, we will explain how to display/save those outputs by using extensions.

6. Add extensions to trainer

There are several optional trainer extensions that provide the following capabilites:

  • Save log files automatically (LogReport)
  • Display the training information to the terminal periodically (PrintReport)
  • Visualize the loss progress by plottig a graph periodically and save its image (PlotReport)
  • Automatically serialize the model or the state of Optimizer periodically (snapshot/snapshot_object)
  • Display Progress Bar to show the progress of training (ProgressBar)
  • Save the model architecture as a dot format readable by Graphviz (dump_graph)

Now you can utilize the wide variety of tools shown above right away! To do so, simply pass the desired extensions object to the Trainer object by using the extend() method of Trainer.

In [ ]:
from chainer.training import extensions

trainer.extend(extensions.LogReport())
trainer.extend(extensions.PrintReport(['epoch', 'main/loss', 'main/accuracy', 'validation/main/loss', 'validation/main/accuracy', 'elapsed_time']))
trainer.extend(extensions.PlotReport(['main/loss', 'validation/main/loss'], x_key='epoch', file_name='loss.png'))
trainer.extend(extensions.PlotReport(['main/accuracy', 'validation/main/accuracy'], x_key='epoch', file_name='accuracy.png'))
trainer.extend(extensions.snapshot(filename='snapshot_epoch-{.updater.epoch}'))
trainer.extend(extensions.snapshot_object(model.predictor, filename='model_epoch-{.updater.epoch}'))
trainer.extend(extensions.Evaluator(test_iter, model, device=gpu_id))
trainer.extend(extensions.dump_graph('main/loss'))

LogReport

Collect loss and accuracy automatically every epoch or iteration and store the information under the log file in the directory assigned by the out argument of Trainer.

PrintReport

Reporter aggregates the results to output to the standard output. The timing for displaying the output can be given by the list.

PlotReport

PlotReport plots the values specified by its arguments, draws the graph and saves the image in the directory set by ‘file name’.

snapshot

The snapshot method saves the Trainer object at the designated timing (defaut: every epoch) in the directory assigned by out argument in Trainer. The Trainer object, as mentioned before, has an Updater which contains an Optimizer and a model inside. Therefore, as long as you have the snapshot file, you can use it to come back to the training or make inferences using the previously trained model later.

snapshot_object

When you save the whole Trainer object, in some cases it is very tedious to retrieve only the inside of the model. By using snapshot_object, you can save the particular object (in this case, the model wrapped by Classifier) in addition to saving the Trainer object. Classifier is a Chain object that keeps the Chain object given by the first argument as a property called predictor and calculates the loss. Classifier doesn’t have any parameters other than those inside its predictor model, and so we only save model.predictor.

Evaluator

The Iterator that uses the evaluation dataset (such as a validation or test dataset) and the model object are passed to Evaluator. The Evaluator evaluates the model using the given dataset at the specified timing interval.

dump_graph

This method saves the computational graph of the model. The graph is saved in Graphviz dot format. The output location (directory) to save the graph is set by the out argument of Trainer.


The extensions class has a lot of options other than those mentioned here. For instance, by using the trigger option, you can set individual timings to activate the extensions more flexibly. Please take a look at the official document in more detail:Trainer extensions

7. Start Training

To start training, just call run method from Trainer object.

In [8]:
trainer.run()
epoch       main/loss   main/accuracy  validation/main/loss  validation/main/accuracy  elapsed_time
1           1.59174     0.605827       0.830716              0.811017                  11.9659
2           0.620236    0.8436         0.468635              0.878362                  15.3477
3           0.434218    0.883229       0.375343              0.897943                  18.6432
4           0.370276    0.896985       0.331921              0.906843                  21.9966
5           0.336392    0.905517       0.306286              0.914062                  25.3211
6           0.313135    0.911114       0.290228              0.917623                  28.6711
7           0.296385    0.915695       0.277794              0.921084                  32.0399
8           0.282124    0.919338       0.264538              0.924248                  35.3713
9           0.269923    0.922858       0.257158              0.923853                  38.7191
10          0.25937     0.925373       0.245689              0.927907                  42.0867

Let’s see the graph of loss saved in the mnist_result directory.

In [9]:
from IPython.display import Image
Image(filename='mnist_result/loss.png')
Out[9]:
../../../../_images/notebook_hands_on_chainer_begginers_hands_on_02_Try_Trainer_class_20_0.png

How about the accuracy?

In [10]:
Image(filename='mnist_result/accuracy.png')
Out[10]:
../../../../_images/notebook_hands_on_chainer_begginers_hands_on_02_Try_Trainer_class_22_0.png

Furthermore, let’s visualize the computational graph output by dump_graph of extensions using Graphviz.

In [13]:
!apt-get install graphviz -y
!dot -Tpng mnist_result/cg.dot -o mnist_result/cg.png
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In [14]:
Image(filename='mnist_result/cg.png')
Out[14]:
../../../../_images/notebook_hands_on_chainer_begginers_hands_on_02_Try_Trainer_class_25_0.png

From the top to the bottom, you can track the data flow of the computations, how data and parameters are passed to what type of Function and the calculated loss is output.

8. Evaluate a pre-trained model

In [15]:
import numpy as np
from chainer import serializers
from chainer.cuda import to_gpu
from chainer.cuda import to_cpu

model = MLP()
serializers.load_npz('mnist_result/model_epoch-10', model)

%matplotlib inline
import matplotlib.pyplot as plt

x, t = test[0]
plt.imshow(x.reshape(28, 28), cmap='gray')
plt.show()
print('label:', t)

if gpu_id >= 0:
    model.to_gpu(gpu_id)
    x = to_gpu(x[None, ...])
    y = model(x)
    y = to_cpu(y.data)
else:
    x = x[None, ...]
    y = model(x)
    y = y.data

print('predicted_label:', y.argmax(axis=1)[0])
../../../../_images/notebook_hands_on_chainer_begginers_hands_on_02_Try_Trainer_class_28_0.png
label: 7
predicted_label: 7

It successfully executed !!